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| #LINK | |||
| #lang | en | ||
| #attribution_name | GenoCon | ||
| #attribution_url | http://atted.jp/download.shtml | ||
| #license | http://creativecommons.org/publicdomain/zero/1.0/deed.ja | ||
| #file_name | tooltip_DataTable | ||
| #download_from | http://linkdata.org/work/rdf1s484i | ||
| #namespace | Work | http://linkdata.org/work/ | |
| #property | explanation | URL | Work Name |
| #object_type_xsd | string | string | string |
| #property_context | Assertion | Assertion | Assertion |
| AtGenExpress | Developmental Arabidopsis thaliana microarray measurements. AtGenExpress is a high-throughput database which includes microarray measurements of gene expression in several conditions. The Developmental Series includes measurements from the main tissue organs of the plants. | Work:rdf1s456i | AtGenExpress |
| Diurnal | Circadian Arabidopsis thaliana microarray measurements. The DIURNAL project is a microarray gene expression database which was collected over two days (44 hours) at four hour intervals in various growth conditions. These measurements are made on 7-9 day old seedlings, and show gene expression levels across the whole plant. | Work:rdf1s461i | DIURNAL |
| ATTED_II | The ATTED-II database uses gene co-expression analysis of the AtGenExpress data to predict functional 7 base-pair motifs in promoters. Motifs identified within a promoter region 200 bp upstream of the transcription start site. | Work:rdf1s458i | ATTED-II |
| PPDB_MPSS | The Plant Promoter Database (PPDB) also deposits the data of transcription start sites (TSSs) detected by the CT-MPSS method. The CT-MPSS method is a combination of cap trapper (CT), a reliable method for preparing the 5' end of full-length cDNA, and massively parallel signature sequencing (MPSS), which enables ultra-parallel sequencing in a considerably shorter time and at lower cost than conventional sequencing methods. | Work:rdf1s459i | PPDB (Plant Promoter Database) |
| PPDB_reliable_LDSS | The Plant Promoter Database (PPDB) uses word frequency analysis to identify 8 base-pair motifs in promoters. Motifs are categorized as TATA-box, Y-patch (a CT-rich region often found in plant TATA box promoters), the initiator near the transcription start site, and cis-regulatory motifs. The regulatory motifs are a group of 308 8 base-pair sequences which are used to represent regulatory sites. | Work:rdf1s459i | PPDB (Plant Promoter Database) |
| AtGenExpress_median | Gene expression data from AtGenExpress was taken in triplicate, and we use the median value. Expression data was used as log-transformed absolute expression values. | Work:rdf1s460i | AtGenExpress median |
| diurnal_COL_LDHH | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_COL_SD | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_DD_DDHC | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LDHC | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LDHH_SM | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LDHH_ST | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LER_SD | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LIGHT5_HIF138_13 | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LIGHT5_HIF138_8 | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LIGHT5_znknOX | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LL12_LDHH | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method. | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LL23_LDHH | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method. | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LLHC | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LL_LDHC | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_LL_LLHC | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_lhyox_SD | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_longday | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method. | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_lux_2_LDHH | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_phyB9_SD | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| diurnal_shortday | For DIURNAL gene expression data, we calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method. | Work:rdf1s457i | DIURNAL fitted up with sine wave |
| AtGenExpress_normalize | Expression data from AtGenExpress is used as values normalized to the mean of all experiments for the AtGenExpress data. | Work:rdf1s369i | AtGenExpress normalized |
| diurnal_COL_LDHH_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_COL_SD_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_DD_DDHC_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LDHC_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LDHH_SM_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LDHH_ST_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LER_SD_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LIGHT5_HIF138_13_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LIGHT5_HIF138_8_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LIGHT5_znknOX_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LL12_LDHH_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method. | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LL23_LDHH_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method. | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LLHC_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LL_LDHC_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_LL_LLHC_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_lhyox_SD_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_longday_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method. | Work:rdf1s370i | DIURNAL normalized |
| diurnal_lux_2_LDHH_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_phyB9_SD_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s370i | DIURNAL normalized |
| diurnal_shortday_normalize | Expression data from DIURNAL is used as values normalized to the mean expression value over 12 measurements for the DIURNAL data. The data are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method. | Work:rdf1s370i | DIURNAL normalized |
| AtGenExpress_ATTED_Flowering | This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with flowering tissues. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| AtGenExpress_ATTED_Fruit_Seeds | This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with fruit and seed tissues. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| AtGenExpress_ATTED_Leaf | This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with leaf tissues. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| AtGenExpress_ATTED_Root | This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with root tissues. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| AtGenExpress_ATTED_Seedling | This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with seedling tissues. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| AtGenExpress_ATTED_Stem | This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with stem tissues. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| AtGenExpress_ATTED_Whole_Plant | This is the data set of AtGenExpress Developmental Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with whole plant body parts. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| Heptamer_elements | A list of the 7mer sequence motifs from ATTED-II. This table lists each 7mer along with the calculated CEG value and the position from the TSS of the maximum CEG value. | Work:rdf1s328i | Developmental Coexpression (AtGenExpress + ATTED-II promoter motif) Full |
| AtGenExpress_PPDB_Flowering | This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. This collection of Gene Expression Properties are associated with flowering tissues. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| AtGenExpress_PPDB_Fruit_Seeds | This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with fruit and seed tissues. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| AtGenExpress_PPDB_Leaf | This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with leaf tissues. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| AtGenExpress_PPDB_Root | This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with root tissues. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| AtGenExpress_PPDB_Seedling | This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with seedling tissues. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| AtGenExpress_PPDB_Stem | This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with stem tissues. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| AtGenExpress_PPDB_Whole_Plant | This is the data set of AtGenExpress Developmental Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with whole plant body parts. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| Octamer_elements | A list of the 8mer sequence motifs from PPDB. This table lists each 8mer along with the appropriate median position from the TSS, calculated from all 8mers. | Work:rdf1s329i | Developmental Genomic (AtGenExpress + PPDB promoter motif) Full |
| DiurnalHours_ATTED_COL_LDHH | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_COL_SD | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_DD_DDHC | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LDHC | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LDHH_SM | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LDHH_ST | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LER_SD | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LIGHT5_HIF138_13 | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LIGHT5_HIF138_8 | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LIGHT5_znknOX | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LL12_LDHH | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method. | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LL23_LDHH | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method. | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LLHC | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LL_LDHC | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_LL_LLHC | This is the data set of DIURNAL Circadian Mic4roarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_lhyox_SD | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_longday | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method. | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_lux_2_LDHH | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_phyB9_SD | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_ATTED_shortday | This is the data set of DIURNAL Circadian Microarray data, coupled with the ATTED-II promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method. | Work:rdf1s330i | Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full |
| DiurnalHours_PPDB_COL_LDHH | This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h). | Work:rdf1s331i | Circadian Genomic (DIURNAL + PPDB promoter motif) Full |
| DiurnalHours_PPDB_COL_SD | This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h). | Work:rdf1s331i | Circadian Genomic (DIURNAL + PPDB promoter motif) Full |
| DiurnalHours_PPDB_DD_DDHC | This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h). | Work:rdf1s331i | Circadian Genomic (DIURNAL + PPDB promoter motif) Full |
| DiurnalHours_PPDB_LDHC | This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h). | Work:rdf1s331i | Circadian Genomic (DIURNAL + PPDB promoter motif) Full |
| DiurnalHours_PPDB_LDHH_SM | This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method. | Work:rdf1s331i | Circadian Genomic (DIURNAL + PPDB promoter motif) Full |
| DiurnalHours_PPDB_LDHH_ST | This is the data set of DIURNAL Circadian Microarray data, coupled with the PPDB (Plant Promoter Database) promoter motif predictions. & #13; & #10;This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method. | Work:rdf1s331i | Circadian Genomic (DIURNAL + PPDB promoter motif) Full |
Koro_Nishikata
Robert_Cox
